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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 6,614
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008210
Taxonomy381666 - Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
StrainATCC 17699 / H16 / DSM 428 / Stanier 337
Last modifiedMay 10, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000009285.2 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Ralstonia eutropha) pan proteome (fasta)
BuscoC:99.9%[S:98.8%,D:1%],F:0%,M:0.1%,n:688
CompletenessStandard

Ralstonia eutropha strain H16 is a facultatively lithoautotrophic, soil dwelling betaproteobacterium that is used for the production of a biodegradable thermoplastic (Biopol) on an industrial scale. It is able to grow with only H2 and CO2 as its sole sources of energy and carbon. In the absence of O2 it can also grow anaerobically using dentrification as an energy source. It also serves as a model organism for genetics and control of autotrophic carbon dioxide fixation and hydrogen oxidation. Taking advantage of its lithoautotrophic capability when growing on H2, it might be developed as cell factory in a future hydrogen-based biotechnology for the production of diverse, commercially valuable compounds such as metabolites and polymers.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 13648
Chromosome 22555
Plasmid megaplasmid pHG1414

Publications

  1. "Complete nucleotide sequence of pHG1: a Ralstonia eutropha H16 megaplasmid encoding key enzymes of H(2)-based lithoautotrophy and anaerobiosis."
    Schwartz E., Henne A., Cramm R., Eitinger T., Friedrich B., Gottschalk G.
    J. Mol. Biol. 332:369-383(2003) [PubMed] [Europe PMC] [Abstract]
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