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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 5,315
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008208
Taxonomy428406 - Ralstonia pickettii (strain 12D)
Strain12D
Last modifiedSeptember 30, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000023425.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Ralstonia pickettii (strain 12J) pan proteome (fasta)

Ralstonia spp. are aerobic Gram-negative, oxidase positive, non-fermentative rods that are found in water and soil. They have been recently separated from Burkholderia spp. Ralstonia pickettii is emerging as an opportunistic nocosomial pathogen in both the hospital setting and from environmental sources. R. pickettii has been isolated from a wide variety of clinical specimens including blood, urine and cerebrospinal fluid. It has been identified in biofilm formation in plastic water piping as well as in ultrapure water in industrial systems, in the space shuttle water system and in laboratory-based ultrapure water systems. It also has considerable biodegradative properties, being able to degrade a number of toxic compounds such as aromatic hydrocarbons, chlorinated phenolic compounds and so on.

Strain 12D was isolated in 1999 from sediments from Torch Lake, a heavily copper-contaminated lake located in Michigan, USA. It is resistant to high concentrations of copper, moderate levels of nickel and low concentrations of and cadmium (modified from PubMed 12545313 and 16337309).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome 13398
Chromosome 21180
Plasmid pRp12D01427
Plasmid pRp12D02274
Plasmid pRp12D0367

Publications

  1. "Complete sequence chromosome 2 of Ralstonia pickettii 12D."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Meincke L., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N.
    Richardson P.
    Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases
  2. "Complete sequence plasmid 2 of Ralstonia pickettii 12D."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Meincke L., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N.
    Richardson P.
    Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases
  3. "Complete sequence plasmid 3 of Ralstonia pickettii 12D."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Meincke L., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N.
    Richardson P.
    Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases
  4. "Complete sequence chromosome 1 of Ralstonia pickettii 12D."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Meincke L., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N.
    Richardson P.
    Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases
  5. "Complete sequence plasmid 1 of Ralstonia pickettii 12D."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Meincke L., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N.
    Richardson P.
    Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases
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