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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 4,068
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008186
Taxonomy211586 - Shewanella oneidensis (strain MR-1)
StrainMR-1
Last modifiedNovember 5, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000146165.2 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Shewanella oneidensis (strain MR-1) pan proteome (fasta)
BuscoC:99.6%[S:99.3%,D:0.2%],F:0.2%,M:0.2%,n:452
CompletenessStandard

Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. . They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species. It uses oxygen as the terminal electron acceptor during aerobic respiration; however during anaerobic conditions, S.oneidensis undertakes respiration by reducing alternative terminal electron acceptors such as oxidized metals, fumarate, nitrate etc. Shewanella species can directly reduce both uranium and chromium from the dissolved liquid state. Such abilities could facilitate the removal of dilute metal pollutants in both contained-storage and natural sites. Additionally S.oneidensis can immobilize toxic metals through the formation of insoluble metal sulfides. Finally it has been proposed for bioremediation of anoxic polluted sites. S.oneidensis might prove useful for direct bioremediation of both metal and organic pollutants under anaerobic conditions.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome3960
Plasmid pMR-1108
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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