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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 11
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008175
Taxonomy10916 - Rotavirus C (strain RVC/Pig/United States/Cowden/1980)
StrainPig/United States/Cowden/1980
Last modifiedMay 14, 2020
Genome assemblyi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> from ENA/EMBL
Genome annotationi ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Human rotavirus C pan proteome (fasta)

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Genome11

Publications

  1. "The correct sequence of the porcine group C/Cowden rotavirus major inner capsid protein shows close homology with human isolates from Brazil and the U.K."
    Cooke S.J., Clarke I.N., Freitas R.B., Gabbay Y.B., Lambden P.R.
    Virology 190:531-537(1992) [PubMed] [Europe PMC] [Abstract]
  2. "Sequence analysis of three non structural proteins of a porcine group C (Cowden strain) rotavirus."
    Bremont M., Chabanne-Vautherot D., Cohen J.
    Arch. Virol. 130:85-92(1993) [PubMed] [Europe PMC] [Abstract]
  3. "Molecular analysis of the gene 6 from a porcine group C rotavirus that encodes the NS34 equivalent of group A rotaviruses."
    Qian Y., Jiang B., Saif L.J., Kang S.Y., Ojeh C.K., Green K.Y.
    Virology 184:752-757(1991) [PubMed] [Europe PMC] [Abstract]
  4. "Sequences of the four larger proteins of a porcine group C rotavirus and comparison with the equivalent group A rotavirus proteins."
    Bremont M., Juste-Lesage P., Chabanne-Vautherot D., Charpilienne A., Cohen J.
    Virology 186:684-692(1992) [PubMed] [Europe PMC] [Abstract]
  5. "Comparisons of nucleotide and deduced amino acid sequences of NSP4 genes of virulent and attenuated pairs of group A and C rotaviruses."
    Chang K.O., Kim Y.J., Saif L.J.
    Virus Genes 18:229-233(1999) [PubMed] [Europe PMC] [Abstract]
  6. "Sequence conservation of gene 8 between human and porcine group C rotaviruses and its relationship to the VP7 gene of group A rotaviruses."
    Qian Y., Jiang B., Saif L.J., Kang S.Y., Ishimaru Y., Yamashita Y., Oseto M., Green K.Y.
    Virology 182:562-569(1991) [PubMed] [Europe PMC] [Abstract]
  7. "Sequence analysis of the gene (6) encoding the major capsid protein (VP6) of group C rotavirus: higher than expected homology to the corresponding protein from group A virus."
    Bremont M., Chabanne-Vautherot D., Vannier P., McCrae M.A., Cohen J.
    Virology 178:579-583(1990) [PubMed] [Europe PMC] [Abstract]
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