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Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 5,605
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008152
Taxonomy338187 - Vibrio campbellii (strain ATCC BAA-1116 / BB120)
StrainATCC BAA-1116 / BB120
Last modifiedOctober 18, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="">more...</a>)</p> GCA_000017705.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:99.2%[S:99.1%,D:0.1%],F:0.3%,M:0.5%,n:1445 vibrionales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Close to Standard

Vibrio harveyi is a bioluminescent marine bacterium in which the luminescence genes are regulated by quorum sensing. Within the aqueous environment, this free living organism can be found throughout the water column, buried in the sediment, as well as on the exterior surfaces of marine organisms. Unlike the related bacterial species, Vibrio fischeri, which forms a mutualistic association with a squid species, Vibrio harveyi does not form any symbiotic relationship with any other organism. However, there is one well documented example of a relationship with another microorganism causing a phenomenon known as the Milky Sea effect. This occurs when large areas of the ocean are filled with luminescing V. harveyi living in association with colonies of the microalga Phaeocystis.

Vibrio harveyi is a pathogen of fish and invertebrates, including sharks, sea-bass, seahorses, lobster, and shrimp. Its pathogenicity depends on the concentration of V. harveyi cells at a given time. Diseases caused by V. harveyi include eye-lesions, gastro-enteritis, vasculitis, and luminous vibriosis. Luminous vibriosis is a leading cause of death among commercially farmed shrimp and other aquaculture. The infection enters through the mouth and forms plaques, then spreads to the innards and the appendages. Loss of limb function and appendage degradation has been documented. Contamination can spread all the way to egg and larval tanks, thus causing an even bigger problem for shrimp farmers. Luminous vibriosis has been documented in many other crustaceans all of which glow in the dark when infected.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome I3364
Chromosome II2197
Plasmid pVIBHAR117
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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