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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 1,913
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008140
Taxonomy695562 - Lactobacillus amylovorus (strain GRL 1118)
StrainGRL 1118
Last modifiedMarch 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000194115.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) pan proteome (fasta)
CompletenessStandard

Lactobacilli are normal inhabitants of the gastrointestinal tract of man and animals where they are widely considered to exert a number of beneficial roles including immunomodulation, interference with enteric pathogens, and maintenance of a healthy intestinal microflora. Historically, probiotic roles have been ascribed primarily to Lactobacillus acidophilus. The genus Lactobacillus presently comprises more than 50 recognized species of non-pathogenic bacteria which in addition to their probiotic effects are useful to human as indispensable agents for the fermentation of foods and feed. Lactobacillus amylovorus (strain GRL 1118) is an anaerobic, nonmotile, non-spore-forming, and rod-shaped Gram-positive bacterium isolated from porcine ileum and which shows strong adherence to pig intestinal epithelial cells. L. amylovorus is an abundant Lactobacillus species found in the intestines of piglets that has exhibited several potential probiotic properties, such as antimicrobial activity against enteric pathogens. It shows features typical of homofermentative Lactobacillus species, like the production of large quantities of lactic acid and small amounts of acetic acid but no gas from glucose. It requires a number of vitamins for growth. L. amylovorus is one of the dominant S-layer-carrying Lactobacillus species in pigs, showing strong adherence to the pig intestinal epithelial cells and being of interest because of its potential probiotic properties. (Adapted from PMID: 21478337).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome1835
Plasmid plasmid16
Plasmid plasmid272

Publications

  1. "Genome sequence of Lactobacillus amylovorus GRL1118, isolated from pig ileum."
    Kant R., Paulin L., Alatalo E., de Vos W.M., Palva A.
    J. Bacteriol. 193:3147-3148(2011) [PubMed] [Europe PMC] [Abstract]
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