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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 4,620
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000007938
Taxonomy596154 - Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601)
StrainDSM 14773 / CIP 107495 / K601
Last modifiedJanuary 15, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000204645.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) pan proteome (fasta)
BuscoC:99.1%[S:98.8%,D:0.3%],F:0.7%,M:0.2%,n:582
CompletenessStandard

Chlorate contamination of groundwater is a big problem that is often associated with the manufacture and use of explosives and munitions. To clean up chlorate-contaminated areas, some researchers turn to bacteria that can break down these compounds. These microbes can produce oxygen in anaerobic conditions, which can speed up the process of breaking down other compounds that do not degrade quickly in anaerobic environments such as the hydrocarbon benzene. Adding chlorate-reducing bacteria to contaminated, oxygen-poor environments could therefore encourage the growth of other bacteria that need oxygen to break down other compounds found at these sites. Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) is an aerobic, Gram-negative bacterium isolated from a facultative aerobic sewage sludge. A. denitrificans is able to degrade benzene coupled to chlorate reduction. (Adapted from: genome.jgi-psf.org/alide/alide.home.html and PMID 7386037).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome4531
Plasmid pALIDE20189
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Main funding by: National Institutes of Health

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