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Overview

StatusReference proteome
Proteinsi20,004
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000007875
Taxonomy51511 - Ciona savignyi
Last modifiedOctober 26, 2018
Genome assembly and annotationifrom Ensembl

Ciona savignyi (the Pacific transparent sea squirt) is a solitary, sessile tunicate species. Native to shallow marine waters around Japan, it has also spread to the west coast of North America. Like the closely related species C. intestinalis, it is regarded as a pest species since it forms dense aggregates on man-made structures such as boat hulls and aquaculture rafts. It is of interest to researchers studying chordate development and evolution.

The genome, estimated to be 180 Mb in size, derives from a single individual from San Francisco Bay. The genome is highly polymorphic making assembly challenging.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Unassembled WGS sequence20003
Mitochondrion12

Publications

  1. Birren B., Nusbaum C., Abebe A., Abouelleil A., Adekoya E., Ait-zahra M., Allen N., Allen T., An P., Anderson M., Anderson S., Arachchi H., Armbruster J., Bachantsang P., Baldwin J., Barry A., Bayul T., Blitshsteyn B.
    Lander E.
    Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases
  2. "Mitochondrial genome of Ciona savignyi (Urochordata, Ascidiacea, Enterogona): comparison of gene arrangement and tRNA genes with Halocynthia roretzi mitochondrial genome."
    Yokobori S., Watanabe Y., Oshima T.
    J. Mol. Evol. 2003:574-587(2003) [PubMed] [Europe PMC] [Abstract]
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