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StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 35,819
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000007819
Taxonomy7029 - Acyrthosiphon pisum
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="">more...</a>)</p> GCA_000142985.2 from EnsemblMetazoa full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (M) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment, and the name of the taxonomic lineage dataset used.</p> C:99.4%[S:96.7%,D:2.7%],F:0.4%,M:0.2%,n:2510 hemiptera_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Outlier (high value)

Acyrthosiphon pisum (Aphididae, Macrosiphini) is an economically important parasite of legume crops (Fabaceae) and is considered the model species of aphid. Like all Aphididae it forms a symbiotic obligate relationship with Buchnera aphidicola and in 2010 they became the first insect-endosymbiont pair to have the genomes of both partners sequenced. A. pisum was also the first basal hemimetabolous with a sequenced genome.

A 464 Mb draft genome assembly of A. pisum was prepared by the International Aphid Genomics Consortium. Analysis of the genome suggests that co-evolution with Buchnera may have led to extensive gene loss including genes involved in immunity related pathways, selenoprotein utilisation, purine salvage and the entire urea cycle. In contrast 2000 gene families in A. pisum are duplicated, including those involved in miRNA synthesis and sugar transport.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence35819


  1. Jiang H., Abraham K., Ali S., Alsbrooks S.L., Anim B.N., Anosike U.S., Attaway T., Bandaranaike D.P., Battles P.K., Bell S.N., Bell A.V., Beltran B., Bickham C., Bustamante Y., Caleb T., Canada A., Cardenas V., Carter K.
    Gibbs R.A.
    Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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