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Overview

StatusReference proteome
Proteinsi35,819
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000007819
Taxonomy7029 - Acyrthosiphon pisum
StrainLSR1
Last modifiedOctober 26, 2018
Genome assembly and annotationi GCA_000142985.2 from EnsemblMetazoa

Acyrthosiphon pisum (Aphididae, Macrosiphini) is an economically important parasite of legume crops (Fabaceae) and is considered the model species of aphid. Like all Aphididae it forms a symbiotic obligate relationship with Buchnera aphidicola and in 2010 they became the first insect-endosymbiont pair to have the genomes of both partners sequenced. A. pisum was also the first basal hemimetabolous with a sequenced genome.

A 464 Mb draft genome assembly of A. pisum was prepared by the International Aphid Genomics Consortium. Analysis of the genome suggests that co-evolution with Buchnera may have led to extensive gene loss including genes involved in immunity related pathways, selenoprotein utilisation, purine salvage and the entire urea cycle. In contrast 2000 gene families in A. pisum are duplicated, including those involved in miRNA synthesis and sugar transport.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Unassembled WGS sequence35819

Publications

  1. Jiang H., Abraham K., Ali S., Alsbrooks S.L., Anim B.N., Anosike U.S., Attaway T., Bandaranaike D.P., Battles P.K., Bell S.N., Bell A.V., Beltran B., Bickham C., Bustamante Y., Caleb T., Canada A., Cardenas V., Carter K.
    Gibbs R.A.
    Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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