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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 18,141
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000007754
Taxonomy59729 - Taeniopygia guttata
Last modifiedNovember 5, 2019
Genome assemblyi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> from Ensembl full
Genome annotationi Ensembl
BuscoC:95.4%[S:91.2%,D:4.3%],F:3.6%,M:0.9%,n:4915
CompletenessStandard

Taeniopygia guttata, the zebra finch, belongs to the order Passeriformes. It is a model organism in the field of neuroscience, especially for the study of human speech.

The genome was published in 2010. The sequence is that of a male, chosen in order to maximize coverage of the Z chromosome. It comprises 1.2 Gb. Gene models were built by ENSEMBL using alignments with chicken and other avian as well as mammalian proteins.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 11123
Chromosome 1A886
Chromosome 1B34
Chromosome 21339
Chromosome 31169
Chromosome 4741
Chromosome 4A348
Chromosome 5934
Chromosome 6561
Chromosome 7519
Chromosome 8416
Chromosome 9457
Chromosome 10393
Chromosome 11371
Chromosome 12348
Chromosome 13321
Chromosome 14390
Chromosome 15350
Chromosome 17299
Chromosome 18307
Chromosome 19312
Chromosome 20329
Chromosome 21191
Chromosome 2298
Chromosome 23205
Chromosome 24180
Chromosome 2592
Chromosome 26176
Chromosome 27237
Chromosome 28227
Chromosome LG51
Chromosome LG22
Chromosome LGE2242
Chromosome Z745
Mitochondrion13
Unplaced
3985
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Main funding by: National Institutes of Health

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