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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 8
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000007611
Taxonomy28365 - Xanthomonas phage phiLf
Last modifiedFebruary 26, 2021
Genome assemblyi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> from ENA/EMBL
Genome annotationi ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Xanthomonas phage phiLf (Bacteriophage phi-Lf) pan proteome (fasta)
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Genome8

Publications

  1. "A region of the filamentous phage phi Lf genome that can support autonomous replication and miniphage production."
    Lin N.T., Wen F.S., Tseng Y.H.
    Biochem. Biophys. Res. Comm. 218:12-16(1996) [PubMed] [Europe PMC] [Abstract]
  2. "Identification of gene VI of filamentous phage phi Lf coding for a 10-kDa minor coat protein."
    Liu T.J., Wen F.S., Tseng T.T., Yang M.T., Lin N.T., Tseng Y.H.
    Biochem. Biophys. Res. Comm. 239:752-755(1997) [PubMed] [Europe PMC] [Abstract]
  3. "Characterization of an open reading frame involved in site-specific integration of filamentous phage Cf1t from Xanthomonas campestris pv. citri."
    Shieh G.J., Lin C.H., Kuo J.L., Kuo T.T.
    Gene 158:73-76(1995) [PubMed] [Europe PMC] [Abstract]
  4. "Nucleotide sequence of the gene presumably encoding the adsorption protein of filamentous phage phi Lf."
    Wen F.S., Tseng Y.H.
    Gene 172:161-162(1996) [PubMed] [Europe PMC] [Abstract]
  5. "Nucleotide sequence determination, characterization and purification of the single-stranded DNA-binding protein and major coat protein of filamentous phage phi Lf of Xanthomonas campestris pv. campestris."
    Wen F.S., Tseng Y.H.
    J. Gen. Virol. 75:15-22(1994) [PubMed] [Europe PMC] [Abstract]
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