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Overview

StatusReference proteome
Proteinsi1,384
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000007391
Taxonomy1163730 - Fervidicoccus fontis (strain DSM 19380 / JCM 18336 / VKM B-2539 / Kam940)
StrainDSM 19380 / VKM B-2539 / Kam940
Last modifiedOctober 26, 2018
Genome assembly and annotationi GCA_000258425.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Fervidicoccus fontis (strain DSM 19380 / JCM 18336 / VKM B-2539 / Kam940) pan proteome (fasta)

Fervidicoccus fontis (strain DSM 19380 / VKM B-2539 / Kam940) is a strictly anaerobic, thermophilic, slightly acidophilic, archaeon isolated from terrestrial hot springs of the Uzon caldera on the Kamchatka peninsula. Cells are non-motile, regular cocci. Growth is observed between 55 and 85 degrees Celsius, with an optimum at 65-70 degrees Celsius (doubling time, 6.1 h), and at pH 4.5-7.5, with optimum growth at pH 5.56.0. No growth is observed at 53 or 89 degrees Celsius or at pH 4.0 or 8.0. F.fontis is organotrophs and grows on a narrow spectrum of energy-rich substrates, such as beef extract, gelatin, peptone, pyruvate, sucrose and yeast extract. Weaker growth is observed on albumin, amygdalin, arabinose, cellobiose, pyruvate, rhamnose, soy flour, sucrose and tryptone . Sulfate, sulfite, thiosulfate and nitrate added as potential electron acceptors did not stimulate growth when tested with peptone. (Adapted from PMID: 19837732).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome1384

Publications

  1. "Analysis of the complete genome of Fervidococcus fontis confirms the distinct phylogenetic position of the order Fervidicoccales and suggests its environmental function."
    Lebedinsky A.V., Mardanov A.V., Kublanov I.V., Gumerov V.M., Beletsky A.V., Perevalova A.A., Bidzhieva S.Kh., Bonch-Osmolovskaya E.A., Skryabin K.G., Ravin N.V.
    Extremophiles 2014:295-309(2014) [PubMed] [Europe PMC] [Abstract]
  2. "Fervidicoccus fontis complete genome analysis confirms its distinct phylogenetic position and predicts its environmental function."
    Lebedinsky A.V., Mardanov A.V., Gumerov V.M., Beletsky A.V., Kublanov I.V., Perevalova A.A., Bonch-Osmolovskaya E.A., Ravin N.V., Skryabin K.G.
    Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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