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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 23,074
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000007303
Taxonomy99883 - Tetraodon nigroviridis
Last modifiedJanuary 29, 2021
Genome assemblyi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> from Ensembl
Genome annotationi Ensembl
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:83.1%[S:72.1%,D:11%],F:5.5%,M:11.4%,n:3640 actinopterygii_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Close to standard (low)

Tetraodon nigroviridis also known as the green pufferfish is a popular aquarium fish. It is readily available and is easily maintained in tap water. The green pufferfish can live for up to 15 years if kept in the right conditions. However, it can be aggressive when placed with another of its own species. The green pufferfish is highly carnivorous and will feed on crustaceans, worms and krill. In the wild they can be found in fresh and brackish water in the coastal regions of Indochina and the Philippines to India.

Tetraodon nigrovirid has the smallest known vertebrate genome at approximately 40 Mb and has thus been selected as a model organism for genetics. In 2004 a draft of its genome sequence was published in Nature. The Tetraodon genome project is a collaboration between Genoscope and the Broad Institute (MIT). The genome is predicted to contain 19,602 protein-coding genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence23060
Mitochondrion14
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Main funding by: National Institutes of Health

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