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Overview

StatusReference proteome
Proteinsi2,386
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000007093
Taxonomy568816 - Acidaminococcus intestini (strain RyC-MR95)
StrainRyC-MR95
Last modifiedFebruary 27, 2018
Genome assembly and annotationi GCA_000230275.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Acidaminococcus intestini (strain RyC-MR95) pan proteome (fasta)

Acidaminococcus intestini (strain RyC-MR95) is a anaerobic Gram-negative bacterium isolated from perianal abscess of a diabetic patient. A.intestini belongs to the class Negativicutes, phylum Firmicutes. Negativicutes show the double-membrane system of Gram-negative bacteria, although their chromosomal backbone is closely related to that of Gram-positive bacteria of the phylum Firmicutes. A. intestini is known to be a normal commensal of the human gut, representing 1% of the fecal bacterial population. It has been occasionally related to infective processes but always associated with polymicrobial infections and might act as a reservoir of antibiotic resistance mechanisms. (Adapted from PMID: 22123762).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome2386

Publications

  1. "Complete genome sequence of Acidaminococcus intestini RYC-MR95, a Gram-negative bacterium from the phylum Firmicutes."
    D'Auria G., Galan J.C., Rodriguez-Alcayna M., Moya A., Baquero F., Latorre A.
    J. Bacteriol. 2011:7008-7009(2011) [PubMed] [Europe PMC] [Abstract]
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