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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 4,930
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000007074
Taxonomy399741 - Serratia proteamaculans (strain 568)
Strain568
Last modifiedJuly 25, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000018085.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Serratia ficaria pan proteome (fasta)

Serratia proteamaculans 568, an Enterobacteriaceae, was isolated as a root endophyte from Populus trichocarpa. S.proteamaculans has been found promote plant growth, and it has been demonstrated that this occurs via the production of specific compounds, such as lipo-chitin oligosaccharides, which are used as specific bacteria-to-plant signals. Individual plant growth promoting bacteria produce specific structurally diverse LCO mixtures. Endophytes are bacteria that live within the tissue of a plant without substantively harming it. They can help promote plant growth in several ways, including helping the host overcome toxic effects of environmental pollution.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome4879
Plasmid pSPRO0151

Publications

  1. "Complete sequence of plasmid of Serratia proteamaculans 568."
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E.
    Richardson P.
    Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases
  2. "Complete sequence of chromosome of Serratia proteamaculans 568."
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E.
    Richardson P.
    Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases
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