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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 3,380
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006878
Taxonomy861360 - Glutamicibacter arilaitensis (strain DSM 16368 / CIP 108037 / IAM 15318 / JCM 13566 / Re117)
StrainDSM 16368 / CIP 108037 / IAM 15318 / JCM 13566 / Re117
Last modifiedJanuary 15, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000197735.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Glutamicibacter arilaitensis (strain DSM 16368 / CIP 108037 / IAM 15318 / JCM 13566 / Re117) (Arthrobacter arilaitensis) pan proteome (fasta)
BuscoC:98.6%[S:98.3%,D:0.3%],F:1.4%,M:0%,n:352
CompletenessStandard

Arthrobacter arilaitensis (strain DSM 16368 / CIP 108037 / JCM 13566 / Re117) is an aerobic, non spore-forming, non-motile, Gram-negative bacterium isolated from the surfaces of smear-ripened cheese (French cheese "Reblochon") cultivated on brain heart infusion (BHI) agar and incubated at 28 degrees Celsius. Colonies on BHI agar are yellow, round, smooth, convex and 2 mm in diameter. A. arilaitensis grows between 10 and 30 degrees Celsius and tolerates up to 10% (w/v) NaCl. Gelatinase, beta-galactosidase, pyrazinamidase, pyrrolidonyl arylamidase, phosphatase and alpha-glucosidase are produced. It is able to use the following substrates as sole carbon sources: D-glucose, maltotriose, maltose, a-lactose, D-arabitol, glycerol, 5-keto-D-gluconate, D-gluconate, protocatechuate, 4-hydroxybenzoate, lactate, glycerate and tyrosine. (Adapted from PMIDs 15653918 and 21124797).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome3324
Plasmid pRE117-146
Plasmid pRE117-213

Publications

  1. "The Arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese."
    Monnet C., Loux V., Gibrat J.F., Spinnler E., Barbe V., Vacherie B., Gavory F., Gourbeyre E., Siguier P., Chandler M., Elleuch R., Irlinger F., Vallaeys T.
    PLoS ONE 5:E15489-E15489(2010) [PubMed] [Europe PMC] [Abstract]
  2. "Complete genome sequence of Arthrobacter arilaitensis (strain DSM 16368 / CIP 108037 / JCM 13566 / Re117)."
    Genoscope.
    Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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