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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 6,798
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006876
Taxonomy762376 - Achromobacter xylosoxidans (strain A8)
StrainA8
Last modifiedApril 14, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000165835.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Achromobacter piechaudii ATCC 43553 pan proteome (fasta)
BuscoC:99.9%[S:99.3%,D:0.6%],F:0%,M:0.1%,n:688

Achromobacter xylosoxidans (strain A8) is an anaerobic, halophilic, nonmotile Gram-positive bacterium isolated from soil contaminated with polychlorinated biphenyls. It can use 2-chlorobenzoate and 2,5-dichlorobenzoate as sole sources of carbon and energy. Besides genes for utilization of xenobiotic organic substrates it encodes genes associated with pathogenesis, toxin production and resistance. (Adapted from PMID: 21097610).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome6445
Plasmid pA81101
Plasmid pA82252

Publications

  1. "Nucleotide sequence, organization and characterization of the (halo)aromatic acid catabolic plasmid pA81 from Achromobacter xylosoxidans A8."
    Jencova V., Strnad H., Chodora Z., Ulbrich P., Vlcek C., Hickey W.J., Paces V.
    Res. Microbiol. 159:118-127(2008) [PubMed] [Europe PMC] [Abstract]
  2. "Complete genome sequence of the haloaromatic acids-degrading bacterium Achromobacter xylosoxidans A8."
    Strnad H., Ridl J., Paces J., Kolar M., Vlcek C., Paces V.
    J. Bacteriol. 193:791-792(2011) [PubMed] [Europe PMC] [Abstract]
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