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Overview

StatusReference proteome
Proteinsi64,200
Gene counti - Download one protein sequence per gene (FASTA)
Proteome IDiUP000006729
Taxonomy3694 - Populus trichocarpa
Straincv. Nisqually
Last modifiedJune 27, 2018
Genome assembly and annotationi GCA_000002775.3 from ENA/EMBL

Populus trichocarpa (Black cottonwood) is a fast growing deciduous tree belonging to the willow family (Salicaceae) which is grown for its timber and for fiber products, mainly in North America.

The genus Populus is widely distributed over the northern hemisphere with many species that are economically important. Populus trichocarpa was chosen as the first tree to be sequenced because of the relatively small size of its genome.

The Populus trichocarpa genome has a haploid chromosome number of 19, and with over 400 Mb is nearly four times larger than the genome of Arabidopsis. There are 44,000 protein-coding genes. About 8,000 pairs of duplicated genes are present due to an early genome duplication event.

Componentsi

Component nameGenome Accession(s)
Proteins
Chloroplast88
Chromosome 72416
Chromosome 172268
Chromosome 17521
Chromosome 143196
Chromosome 122224
Chromosome 191925
Chromosome 54128
Chromosome 92748
Chromosome 104215
Chromosome 152351
Chromosome 43568
Chromosome 112446
Chromosome 182369
Chromosome 83715
Chromosome 33572
Chromosome 162239
Chromosome 64593
Chromosome 132456
Chromosome 24244
Unassembled WGS sequence2063
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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