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Overview

StatusReference proteome
Proteinsi53,336
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006729
Taxonomy3694 - Populus trichocarpa
Straincv. Nisqually
Last modifiedDecember 13, 2018
Genome assembly and annotationi GCA_000002775.3 from ENA/EMBL

Populus trichocarpa (Black cottonwood) is a fast growing deciduous tree belonging to the willow family (Salicaceae) which is grown for its timber and for fiber products, mainly in North America.

The genus Populus is widely distributed over the northern hemisphere with many species that are economically important. Populus trichocarpa was chosen as the first tree to be sequenced because of the relatively small size of its genome.

The Populus trichocarpa genome has a haploid chromosome number of 19, and with over 400 Mb is nearly four times larger than the genome of Arabidopsis. There are 44,000 protein-coding genes. About 8,000 pairs of duplicated genes are present due to an early genome duplication event.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chloroplast88
Chromosome 71924
Chromosome 171999
Chromosome 16026
Chromosome 142562
Chromosome 121935
Chromosome 191673
Chromosome 53404
Chromosome 92145
Chromosome 103375
Chromosome 151888
Chromosome 43011
Chromosome 112163
Chromosome 181962
Chromosome 82996
Chromosome 32999
Chromosome 161833
Chromosome 63673
Chromosome 132032
Chromosome 23458
Unassembled WGS sequence2334
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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