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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 44,378
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006718
Taxonomy9544 - Macaca mulatta
Strain17573
Last modifiedJanuary 9, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000772875.3 from Ensembl full
BuscoC:98.4%[S:39.1%,D:59.3%],F:0.8%,M:0.8%,n:6192
CompletenessStandard

Macaques, genus Macaca are Old World monkeys divided into 22 species. The Rhesus macaque (Macaca mulatta) is widely distributed across Asia and inhabits grasslands, forests, mountains and with greater frequency human urban areas. Adult males average 53cm in height and weigh 8kg; females are smaller and lighter in weight, their body hair is brown or grey but it does not cover the face. Rhesus macaques are very adaptable and are able to live in trees or on the ground. Their diet is mostly herbivorous: fruit, seeds, roots, buds and bark, but with the addition of small insects. They have a strong social group structure with a rich range of vocalizations and gestures for communication.

The current Ensembl genome uses the preliminary assembly Mmul_1 which is melded from the three separate complementary assemblies; as such, it is subject to errors. The genome contains 3.1Gb with 21,905 protein-coding genes and 44,725 predicted transcripts.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 14375
Chromosome 22516
Chromosome 32523
Chromosome 42217
Chromosome 51799
Chromosome 61962
Chromosome 72906
Chromosome 81506
Chromosome 91814
Chromosome 102276
Chromosome 112340
Chromosome 121612
Chromosome 131523
Chromosome 142478
Chromosome 151728
Chromosome 162476
Chromosome 17793
Chromosome 18657
Chromosome 192744
Chromosome 201803
Chromosome X1690
Unplaced
640

Publications

  1. "Molecular analyses of mtDNA deletion mutations in microdissected skeletal muscle fibers from aged rhesus monkeys."
    Gokey N.G., Cao Z., Pak J.W., Lee D., McKiernan S.H., McKenzie D., Weindruch R., Aiken J.M.
    Aging Cell 3:319-326(2004) [PubMed] [Europe PMC] [Abstract]
  2. "Evolutionary and biomedical insights from the rhesus macaque genome."
    Gibbs R.A., Rogers J., Katze M.G., Bumgarner R., Weinstock G.M., Mardis E.R., Remington K.A., Strausberg R.L., Venter J.C., Wilson R.K., Batzer M.A., Bustamante C.D., Eichler E.E., Hahn M.W., Hardison R.C., Makova K.D., Miller W., Milosavljevic A.
    Zwieg A.S.
    Science 316:222-234(2007) [PubMed] [Europe PMC] [Abstract]
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