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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 44,389
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006718
Taxonomy9544 - Macaca mulatta
Strain17573
Last modifiedDecember 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000772875.3 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:97.2%[S:43%,D:54.2%],F:0.4%,M:2.4%,n:13780 primates_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Macaques, genus Macaca are Old World monkeys divided into 22 species. The Rhesus macaque (Macaca mulatta) is widely distributed across Asia and inhabits grasslands, forests, mountains and with greater frequency human urban areas. Adult males average 53cm in height and weigh 8kg; females are smaller and lighter in weight, their body hair is brown or grey but it does not cover the face. Rhesus macaques are very adaptable and are able to live in trees or on the ground. Their diet is mostly herbivorous: fruit, seeds, roots, buds and bark, but with the addition of small insects. They have a strong social group structure with a rich range of vocalizations and gestures for communication.

The current Ensembl genome uses the preliminary assembly Mmul_1 which is melded from the three separate complementary assemblies; as such, it is subject to errors.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 14384
Chromosome 22517
Chromosome 32525
Chromosome 42220
Chromosome 51800
Chromosome 61963
Chromosome 72907
Chromosome 81509
Chromosome 91817
Chromosome 102277
Chromosome 112342
Chromosome 121613
Chromosome 131526
Chromosome 142482
Chromosome 151728
Chromosome 162482
Chromosome 17794
Chromosome 18658
Chromosome 192746
Chromosome 201804
Chromosome X1691
Mitochondrion14
Unplaced
632

Publications

  1. "Molecular analyses of mtDNA deletion mutations in microdissected skeletal muscle fibers from aged rhesus monkeys."
    Gokey N.G., Cao Z., Pak J.W., Lee D., McKiernan S.H., McKenzie D., Weindruch R., Aiken J.M.
    Aging Cell 3:319-326(2004) [PubMed] [Europe PMC] [Abstract]
  2. "Evolutionary and biomedical insights from the rhesus macaque genome."
    Gibbs R.A., Rogers J., Katze M.G., Bumgarner R., Weinstock G.M., Mardis E.R., Remington K.A., Strausberg R.L., Venter J.C., Wilson R.K., Batzer M.A., Bustamante C.D., Eichler E.E., Hahn M.W., Hardison R.C., Makova K.D., Miller W., Milosavljevic A.
    Zwieg A.S.
    Science 316:222-234(2007) [PubMed] [Europe PMC] [Abstract]
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