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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 44,389
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006718
Taxonomy9544 - Macaca mulatta
Strain17573
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_003339765.3 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (M) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment, and the name of the taxonomic lineage dataset used.</p> C:97.2%[S:43.3%,D:53.9%],F:0.4%,M:2.4%,n:13780 primates_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Macaques, genus Macaca are Old World monkeys divided into 22 species. The Rhesus macaque (Macaca mulatta) is widely distributed across Asia and inhabits grasslands, forests, mountains and with greater frequency human urban areas. Adult males average 53cm in height and weigh 8kg; females are smaller and lighter in weight, their body hair is brown or grey but it does not cover the face. Rhesus macaques are very adaptable and are able to live in trees or on the ground. Their diet is mostly herbivorous: fruit, seeds, roots, buds and bark, but with the addition of small insects. They have a strong social group structure with a rich range of vocalizations and gestures for communication.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 14378
Chromosome 22516
Chromosome 32523
Chromosome 42217
Chromosome 51799
Chromosome 61961
Chromosome 72906
Chromosome 81507
Chromosome 91814
Chromosome 102276
Chromosome 112340
Chromosome 121612
Chromosome 131522
Chromosome 142478
Chromosome 151728
Chromosome 162475
Chromosome 17793
Chromosome 18657
Chromosome 192745
Chromosome 201803
Chromosome X1690
Mitochondrion14
Unplaced
639

Publications

  1. "Molecular analyses of mtDNA deletion mutations in microdissected skeletal muscle fibers from aged rhesus monkeys."
    Gokey N.G., Cao Z., Pak J.W., Lee D., McKiernan S.H., McKenzie D., Weindruch R., Aiken J.M.
    Aging Cell 3:319-326(2004) [PubMed] [Europe PMC] [Abstract]
  2. "Evolutionary and biomedical insights from the rhesus macaque genome."
    Gibbs R.A., Rogers J., Katze M.G., Bumgarner R., Weinstock G.M., Mardis E.R., Remington K.A., Strausberg R.L., Venter J.C., Wilson R.K., Batzer M.A., Bustamante C.D., Eichler E.E., Hahn M.W., Hardison R.C., Makova K.D., Miller W., Milosavljevic A.
    Zwieg A.S.
    Science 316:222-234(2007) [PubMed] [Europe PMC] [Abstract]
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