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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 10,409
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006702
Taxonomy331117 - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181)
StrainATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181
Last modifiedAugust 22, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000149645.2 from ENA/EMBL full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:98.3%[S:98.1%,D:0.3%],F:1.3%,M:0.3%,n:4191 eurotiales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Close to Standard

Neosartorya fischeri (Aspergillaceae) is a fungus found in soil, decaying vegetation and organic debris. Unlike its close relative the asexual Aspergillus fumigatus and the second most common fungal infection in the U.S., N. fischeri has a sexual stage and is very rarely pathogenic ocassionally causing keratitis and possibly pulmonary aspergillosis in transplant patients. Comparisons between these close relatives could facilitate studies on the pathogenicity of A. fumigatus and discover why a sexual stage in absent in the important pathogen.

The genome of N. fischeri was sequenced for comparative analyses with other fungal genomes. The resulting assembly is 32.5Mb over 8 chromosomes and contains 10407 genes. Its genome is 10-15% larger than A. clavatus and A. fumigatus and contains 35% more enzymes. 13.5% of the genes of N. fischeri are species-specific and comparative analysis suggests that a few amino acid changes may have may facilitated sexuality in this species.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence10387
Mitochondrion22
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Main funding by: National Institutes of Health

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