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Overview

Proteinsi3,948
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006699
Taxonomy319224 - Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
StrainCN-32 / ATCC BAA-453
Last modifiedNovember 9, 2018
Genome assembly and annotationi GCA_000016585.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Shewanella oneidensis (strain MR-1) pan proteome (fasta)

Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species.

S. putrefaciens CN32 was originally isolated from anaerobic sandstone at a depth of 250 m in the Morrison formation of northwestern New Mexico. It, and related species of metal-reducing Shewanella, effectively reduce polyvalent metals and radionuclides including solid phase Fe and Mn oxides and contaminants including U(VI), Tc(VII), and Cr(VI). The solubility of these contaminants is greatly diminished at lower oxidation states and hence microbial reduction has been proposed as a means for stabilizing contaminants in situ (adapted from genome.jgi-psf.org/shepu/shepu.home.html).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome3948

Publications

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