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Overview

StatusReference proteome
Proteinsi3,894
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006663
Taxonomy469382 - Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3)
StrainATCC 700274 / DSM 11551 / JCM 10706 / PR3
Last modifiedNovember 9, 2018
Genome assembly and annotationi GCA_000172995.2 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) pan proteome (fasta)

Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) is an aerobic, extremely halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto-Rico. The cells are highly pleomorphic (short and long rods, squares, triangles and ovals) and motile by peritrichous flagella. Gas vesicles are present and are responsible for modifying the color of colonies or cell suspensions from red to pink. H. borinquense requires extremely high salt (NaCl) concentrations for growth. It can not only grow aerobically but also anaerobically using nitrate as electron acceptor. At least 8% NaCl (w/v) is required for growth, reflecting the primary characteristic requirement for high salt concentrations of the Halobacteriaceae. The optimal NaCl concentration range is 20-25NaCl (w/v) at 40 degrees Celsius. The temperature range for growth is between 22 and 50 degrees Celsius, with an optimum at 40 degrees Celsius. Nitrate is reduced to nitrite with the production of gas. (Adapted from PMID 21304651).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome2891
Plasmid pHBOR01309
Plasmid pHBOR02304
Plasmid pHBOR03189
Plasmid pHBOR04179
Plasmid pHBOR0523
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Main funding by: National Institutes of Health

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