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Overview

StatusReference proteome
Proteinsi4,424
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006633
Taxonomy639283 - Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)
StrainATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113
Last modifiedJuly 14, 2018
Genome assembly and annotationi GCA_000092925.1 from ENA/EMBL

Starkeya novella is a non-motile soil bacterium that belongs to the facultatively heterotrophic microbes. It is able to grow heterotrophically on a variety of single-carbon compounds, sugar alcohols, amino acids, carboxylic acids, and fatty acids. In addition, it is able to grow chemolithoautotrophically using a variety of inorganic and organic sulfur compounds such as thiosulfate, tetrathionate, dimethylsulfide (DMS), and dimethylsulfoxide. Thus, in addition to carbon cycling, S. novella is also involved in the cycling of sulfur compounds, especially the cycling of DMS, a volatile greenhouse-active gas that is involved in cloud formation. Atmospheric DMS degradation gives rise to methanesulfonic acid, one of the major components of 'acid rain'. Although Starkeya novella has been studied in some detail in the past, only very few studies so far have attempted to address the question of how this organism interfaces the different 'pure' types of metabolism outlined above with growth under mixed conditions. Data on gene regulation and regulatory networks are entirely absent but will be indispensable for an investigation of how carbon and sulfur metabolism are integrated in S. novella (adapted from genome.jgi-psf.org/stanv/stanv.home.html and PMID 11034489).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome4424

Publications

  1. "Complete sequence of Starkeya novella DSM 506."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Davenport K., Brettin T., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Beatson S., Kappler U., Woyke T.
    Submitted (MAY-2010) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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