Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Overview

Proteinsi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> 5,245
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006553
Taxonomy351746 - Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1)
StrainATCC 700007 / DSM 6899 / BCRC 17059 / F1
Last modifiedNovember 9, 2018
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000016865.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440) pan proteome (fasta)

Members of the genus Pseudomonas are characterized by their ability to grow in simple media at the expense of a great variety of organic compounds. They have a strict respiratory metabolism and are motile by one or several polar flagella. They are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. They are are found in nature in a biofilm or in planktonic form. Pseudomonas putida F1 is a versatile environmental isolate (from a polluted creek in Urbana, USA) that is capable of growth on several aromatic hydrocarbons, including benzene, toluene, ethylbenzene and p -cymene. It is chemotactic to aromatic hydrocarbons and chlorinated aliphatic compounds and has the potential for use in bioremediation applications. P. putida F1 is one of the most well-studied aromatic hydrocarbon degrading bacterial strains; over 200 articles have been written about various aspects of P. putida F1 physiology, enzymology, and genetics (adapted from genome.jgi-psf.org/finished_microbes/psepu/psepu.home.html).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome5245

Publications

UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again