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Overview

StatusReference proteome
Proteinsi39,381
Gene counti - Download one protein sequence per gene (FASTA)
Proteome IDiUP000006548
Taxonomy3702 - Arabidopsis thaliana
Straincv. Columbia
Last modifiedJune 27, 2018
Genome assembly and annotationi GCA_000001735.2 from ENA/EMBL

Arabidopsis thaliana (Mouse-ear cress) is a flowering plant belonging to the family Brassicaceae which contains economically important brassica and mustard species. Arabidopsis thaliana was the first plant to have its genome sequenced.

Arabidopsis thaliana is not of economic value itself, but has risen to prominence because of its small size, short generation time and small genome, which make it an ideal plant to use for research.

The Arabidopsis thaliana genome has a haploid chromosome number of 5, containing 135 Mb with 32,000 protein-coding genes. The reference proteome is derived from the genome sequence published in 2000 for the ecotype Columbia (www.nature.com/nature/journal/v408/n6814/full/408796a0.html).

Componentsi

Component nameGenome Accession(s)
Proteins
Chromosome 110311
Chromosome 26167
Chromosome 37727
Chromosome 46034
Chromosome 58985
Mitochondrion148
Chloroplast80

Publications

  1. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
    Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
    McCombie W.R.
    Nature 1999:769-777(1999) [PubMed] [Europe PMC] [Abstract]
  2. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    Tabata S.
    Nature 2000:820-822(2000) [PubMed] [Europe PMC] [Abstract]
  3. "Complete structure of the chloroplast genome of Arabidopsis thaliana."
    Sato S., Nakamura Y., Kaneko T., Asamizu E., Tabata S.
    DNA Res. 1999:283-290(1999) [PubMed] [Europe PMC] [Abstract]
  4. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    Davis R.W.
    Nature 2000:816-820(2000) [PubMed] [Europe PMC] [Abstract]
  5. "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
    Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.
    Fransz P.F.
    Nature 2000:823-826(2000) [PubMed] [Europe PMC] [Abstract]
  6. "The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides."
    Unseld M., Marienfeld J.R., Brandt P., Brennicke A.
    Nat. Genet. 1997:57-61(1997) [PubMed] [Europe PMC] [Abstract]
  7. "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome."
    Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S., Town C.D.
    Plant J. 2017:789-804(2017) [PubMed] [Europe PMC] [Abstract]
  8. "Correction of Persistent Errors in Arabidopsis Reference Mitochondrial Genomes."
    Sloan D.B., Wu Z., Sharbrough J.
    Plant Cell 2018:525-527(2018) [PubMed] [Europe PMC] [Abstract]
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