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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 2,384
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006294
Taxonomy698758 - Amphibacillus xylanus (strain ATCC 51415 / DSM 6626 / JCM 7361 / LMG 17667 / NBRC 15112 / Ep01)
StrainATCC 51415 / DSM 6626 / JCM 7361 / LMG 17667 / NBRC 15112 / Ep01
Last modifiedMay 9, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000307165.1 from ENA/EMBL full
BuscoC:93.6%[S:93.1%,D:0.4%],F:0%,M:6.4%,n:450
CompletenessClose to Standard

Amphibacillus xylanus (strain ATCC 51415 / DSM 6626 / JCM 7361 / LMG 17667 / NBRC 15112 / Ep01) is facultative anaerobic, spore-forming, Gram-positive bacterium isolated from alcaline compost of manure with grass and rice straw. It grows well in an alkaline medium and digested xylan both in strictly anaerobic cultures when titanium(III) citrate is used as a reducing agent and in aerobic cultures with shaking. It grows best at pH between 8.0 and 10.0 but not at pH 7.0. (Adapted from: ijs.sgmjournals.org/content/40/3/297.full.pdf+html).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome2384

Publications

  1. "Whole genome sequence of Amphibacillus xylinus NBRC 15112."
    Nakazawa H., Katano Y., Nakamura S., Sasagawa M., Fukada J., Arai T., Sasakura N., Mochizuki D., Hosoyama A., Harada K., Horikawa H., Kato Y., Harada T., Sasaki K., Sekiguchi M., Hodoyama M., Nishiko R., Narita H.
    Fujita N.
    Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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