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Overview

StatusReference proteome
Proteinsi4,388
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006286
Taxonomy930169 - Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5)
StrainDSM 16502 / CGMCC 1.3690 / B-5
Last modifiedFebruary 27, 2018
Genome assembly and annotationi GCA_000300005.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) pan proteome (fasta)

The genus Alcanivorax is a group of marine bacteria that exclusively uses petroleum oil hydrocarbons as sources of carbon and energy, and has been used for bioremediative interventions in polluted marine and coastal systems. In addition, Alcanivorax species have obvious potential to produce biocatalysts in non-polluting industrial processes and to act as a biosensor for in situ monitoring of aromatic or aliphatic compounds. Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) is an aerobic, motile, halophilic, alkane degrader, Gram-negative bacterium isolated from oil-contaminated surface water of the Bohai Sea at the Yellow River dock at the side of the Shengli oilfield. It can grow on a restricted spectrum of organic compounds, including some organic acids, and alkanes (C5-C36) as sole sources of carbon and energy. A.dieselolei can produce a novel linear lipoaminobiosurfactant, characterized as a proline lipid. The cells are rod-shaped with lophotrichous flagella and their optimal growth temperature is between 4 and 55 degrees Celsius. A.dieselolei is sensitive to neomycin, kanamycin, amikacin and polymyxin B, but resistant to fortum, cefuroxime, cephradin, cefazolin, cefalexin, piperacillin, carbenicillin, ampicillin, oxacillin, penicillin, erythromycin, minomycin, vibramycin, tetracycline, gentamicin, cefobid, rocephin, vancomycin, ofloxacin, midecamycin, ciprofloxacin, norfloxacin, furazolidone, clindamycin, chloromycetin and co-trimoxazole. (Adapted from PMID: 23144414 and 15879252).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome4388

Publications

  1. "Complete genome sequence of Alcanivorax dieselolei type strain B5."
    Lai Q., Li W., Shao Z.
    J. Bacteriol. 2012:6674-6674(2012) [PubMed] [Europe PMC] [Abstract]
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