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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 3,134
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006049
Taxonomy746697 - Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3)
StrainDSM 14238 / LMG 21431 / ACAM 643 / 9-3
Last modifiedMay 3, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000265385.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) pan proteome (fasta)
BuscoC:99.7%[S:99.3%,D:0.4%],F:0%,M:0.3%,n:733
CompletenessStandard

These bacteria were isolated in 2000 from a quartz stone sublithic cyanobacterial community in Vestfold Hills, a mostly snow- and ice-free outcrop in the Antarctic. The hills are located at the north side of Sorsdal Glacier on Ingrid Christensen Coast. Cells are non-motile, orange rods 0.5-20.0 X 4.0-5 um. Metabolism is strictly aerobic and chemoheterotrophic and requires sodium ions for growth (between 1.0% and 6% NaCl). Unable to hydrolyse starch, aesculin, agar, cellulose, CMC, xylan, dextran, DNA, tributyrin, urate, xanthine, casein or elastin, nor can it utilize D-glucose as a sole carbon and energy source in the presence of 0.02% yeast extract. This is the type strain for the species (adapted from wikipedia and PMID 12361255).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome3134
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Main funding by: National Institutes of Health

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