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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 31,989
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006038
Taxonomy4533 - Oryza brachyantha
StrainIRGC 101232
Last modifiedNovember 5, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000231095.2 from EnsemblPlants full
BuscoC:92.6%[S:91.3%,D:1.3%],F:5.9%,M:1.5%,n:1440
CompletenessStandard

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 91729
Chromosome 42795
Chromosome 52577
Chromosome 23555
Chromosome 62612
Chromosome 33890
Chromosome 111817
Chromosome 121710
Chromosome 72300
Chromosome 82101
Chromosome 101710
Chromosome 14514
Unplaced
679

Publications

  1. "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution."
    Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X., Yang L., Song C., Wang M.
    Chen M.
    Nat. Commun. 4:1595-1595(2013) [PubMed] [Europe PMC] [Abstract]
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