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Overview

StatusReference proteome
Proteinsi6,062
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000005667
Taxonomy862719 - Azospirillum lipoferum (strain 4B)
Strain4B
Last modifiedFebruary 27, 2018
Genome assembly and annotationi GCA_000283655.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Azospirillum lipoferum (strain 4B) pan proteome (fasta)

Azospirillum lipoferum 4B was isolated from a rice field in Camargue (in the south of France) in 1982 and has been studied for its high efficiency in nitrogen fixation and for its successful properties of rice colonization and growth promotion. It exhibits mixed flagellation, i.e. it grows with a single polar flagellum in liquid medium and additional lateral flagella on a solid medium. Comparison of 2 fully sequenced Azospirillum (strain 4B plus strain B510, AZOS1) and an incomplete genome A.brasilense Sp245, suggest that horizontal gene transfer has affected nearly 50% of the Azospirillum genomes, in close association with dramatic changes in lifestyle necessary for transition from aquatic to terrestrial environments and association with plants (adapted from www.genoscope.cns.fr/spip/Azospirillum-lipoferum-a-bacterial.html?var_recherche=Azospirillum, PMIDs 10508112 and 22216014).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome2845
Plasmid AZO_p1861
Plasmid AZO_p2608
Plasmid AZO_p3545
Plasmid AZO_p4590
Plasmid AZO_p5406
Plasmid AZO_p6230
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Main funding by: National Institutes of Health

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