Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 6,062
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000005667
Taxonomy862719 - Azospirillum lipoferum (strain 4B)
Strain4B
Last modifiedMarch 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000283655.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Azospirillum lipoferum (strain 4B) pan proteome (fasta)
BuscoC:99.8%[S:98.4%,D:1.5%],F:0%,M:0.2%,n:617
CompletenessStandard

Azospirillum lipoferum 4B was isolated from a rice field in Camargue (in the south of France) in 1982 and has been studied for its high efficiency in nitrogen fixation and for its successful properties of rice colonization and growth promotion. It exhibits mixed flagellation, i.e. it grows with a single polar flagellum in liquid medium and additional lateral flagella on a solid medium. Comparison of 2 fully sequenced Azospirillum (strain 4B plus strain B510, AZOS1) and an incomplete genome A.brasilense Sp245, suggest that horizontal gene transfer has affected nearly 50% of the Azospirillum genomes, in close association with dramatic changes in lifestyle necessary for transition from aquatic to terrestrial environments and association with plants (adapted from www.genoscope.cns.fr/spip/Azospirillum-lipoferum-a-bacterial.html?var_recherche=Azospirillum, PMIDs 10508112 and 22216014).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome2845
Plasmid AZO_p1861
Plasmid AZO_p2608
Plasmid AZO_p3545
Plasmid AZO_p4590
Plasmid AZO_p5406
Plasmid AZO_p6230
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again