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Overview

StatusReference proteome
Proteinsi3,933
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000005267
Taxonomy1036672 - Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001)
StrainDSM 17095 / LMG 22695 / WT001
Last modifiedOctober 24, 2018
Genome assembly and annotationi GCA_000219915.3 from ENA/EMBL

Advenella kashmirensis strain WT001 (formerly named Tetrathiobacter kashmirensis) was isolated from bulk soil of a temperate orchard in Kashmir, India in the sub-tropical Himalayas. They were grown on reduced sulfur compounds as energy and electron sources. Cells are Gram-negative, non-flagellated, oval to coccoid-shaped bacteria occurring singly or in pairs, chains, branched chains or clusters; some cells have capsules. They are facultatively chemolithoautotrophic organisms that use thiosulfate or tetrathionate as electron and energy source; thiocyanate, soluble sulfides, elemental sulfur, sulfite and arsenite are not utilized as chemolithotrophic substrates (adapted from PMID 16166666). Although the genome was initially submitted as a whole draft genome it has subsequently been improved to the whole genome status.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Plasmid pWTk44560
Chromosome3873

Publications

  1. "Whole-genome shotgun sequencing of the sulfur-oxidizing chemoautotroph Tetrathiobacter kashmirensis."
    Ghosh W., George A., Agarwal A., Raj P., Alam M., Pyne P., Das Gupta S.K.
    J. Bacteriol. 2011:5553-5554(2011) [PubMed] [Europe PMC] [Abstract]
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