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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 25,205
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000005239
Taxonomy54126 - Pristionchus pacificus
StrainPS312
Last modifiedNovember 5, 2019
Genome assemblyi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> from EnsemblMetazoa full
Genome annotationi EnsemblMetazoa
BuscoC:62.7%[S:61%,D:1.7%],F:3.7%,M:33.6%,n:982
CompletenessStandard

Pristionchus pacificus is a small, free-living roundworm found in association with scarab beetles and Colorado potato beetles. It is a self-fertilizing hermaphrodite and has a four day generation time at 20C under laboratory conditions.

Pristionchus pacificus is estimated to have diverged from Caenorhabditis elegans 200-300 million years ago and retains many similar traits. It is a model organism for developmental biology, evolutionary ecology and population genetics.

The Pristionchus pacificus genome has a haploid chromosome number of 6, containing 170 Mb with 29,000 protein encoding genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence25205

Publications

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