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StatusReference proteome
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000005238
Taxonomy164328 - Phytophthora ramorum
Last modifiedOctober 26, 2018
Genome assembly and annotationi GCA_000149735.1 from EnsemblProtists

The oomycete, Phytophthora ramorum, is a plant pathogen which causes sudden oak death. This disease affects oak trees as well as over 40 other plant genera. It is an emerging plant pathogen first observed in North America but also widespread in Europe, causing stem cankers on trees, and leaf blight on ornamentals and forest shrub species. There are no treatments currently available that are effective against P. ramorum. While some fungicides can suppress the symptoms, none can kill the pathogen.

The genome sequence was published in 2006 along with that of the soybean pathogen Phytophthora sojae. Comparison of the two genomes reveals a rapid expansion and diversification of many protein families associated with plant infection such as hydrolases, ABC transporters, protein toxins, proteinase inhibitors, and, in particular, a superfamily of 700 proteins with similarity to known oomycete avirulence genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Unassembled WGS sequence15349
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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