Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Overview

StatusReference proteome
Proteinsi27,904
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000005226
Last modifiedDecember 13, 2018
Genome assembly and annotationi GCA_000180615.2 from Ensembl

Takifugu rubripes (also known as Fugu rubripes or fugu) is a pufferfish that is commonly about 40 cm in length and is found in the Pacific Northwest region of Asia. Pufferfish are generally believed to be the second most poisonous vertebrate in the world; however, not all species are poisonous. Certain internal organs, such as the liver and sometimes the skin, contain tetrodotoxin and are highly toxic to most animals when eaten. Nevertheless, the meat of some species is considered a delicacy in Japan.

Pufferfish are able to move their eyes independently, and many species can change the color or intensity of their patterns in response to environmental changes. The pufferfish's excellent eyesight, combined with a sudden burst of speed, is the first and most important defense against predators. The other defense mechanism is to inflate their stomach with water to appear large and thus scare predators.

The fugu (Fugu rubripes) genome project was initiated in 1989 by Sydney Brenner and colleagues. In 1993, this team showed that the fugu genome is 390 Mb, about one-eighth the size of the human genome, yet it contains a similar repertoire of genes to humans. A draft sequence of the fugu genome was determined using a whole-genome shotgun strategy, and was released by the International Fugu Genome Consortium in 2002. The genome is thought to contain 18,093 protein-coding genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Unplaced
5855
Chromosome 15957
Chromosome 20995
Chromosome 16845
Chromosome 14875
Chromosome 51196
Chromosome 11839
Chromosome 12862
Chromosome 2939
Chromosome 4937
Chromosome 22919
Chromosome 91220
Chromosome 211179
Chromosome 191138
Chromosome 10634
Chromosome 131048
Chromosome 6880
Chromosome 31109
Chromosome 171030
Chromosome 71081
Chromosome 18558
Chromosome 11857
Chromosome 8957

Publications

  1. "Integration of the genetic map and genome assembly of fugu facilitates insights into distinct features of genome evolution in teleosts and mammals."
    Kai W., Kikuchi K., Tohari S., Chew A.K., Tay A., Fujiwara A., Hosoya S., Suetake H., Naruse K., Brenner S., Suzuki Y., Venkatesh B.
    Genome Biol. Evol. 2011:424-442(2011) [PubMed] [Europe PMC] [Abstract]
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again