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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 51,078
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000005226
Taxonomy31033 - Takifugu rubripes
Last modifiedAugust 23, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000180615.2 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:92.8%[S:49.9%,D:42.9%],F:1.5%,M:5.6%,n:3640 actinopterygii_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Outlier

Takifugu rubripes (also known as Fugu rubripes or fugu) is a pufferfish that is commonly about 40 cm in length and is found in the Pacific Northwest region of Asia. Pufferfish are generally believed to be the second most poisonous vertebrate in the world; however, not all species are poisonous. Certain internal organs, such as the liver and sometimes the skin, contain tetrodotoxin and are highly toxic to most animals when eaten. Nevertheless, the meat of some species is considered a delicacy in Japan.

Pufferfish are able to move their eyes independently, and many species can change the color or intensity of their patterns in response to environmental changes. The pufferfish's excellent eyesight, combined with a sudden burst of speed, is the first and most important defense against predators. The other defense mechanism is to inflate their stomach with water to appear large and thus scare predators.

The fugu (Fugu rubripes) genome project was initiated in 1989 by Sydney Brenner and colleagues. In 1993, this team showed that the fugu genome is 390 Mb, about one-eighth the size of the human genome, yet it contains a similar repertoire of genes to humans. A draft sequence of the fugu genome was determined using a whole-genome shotgun strategy, and was released by the International Fugu Genome Consortium in 2002. The genome is thought to contain 18,093 protein-coding genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unplaced
1292
Chromosome 152294
Chromosome 202465
Chromosome 161704
Chromosome 141931
Chromosome 52428
Chromosome 112139
Chromosome 121850
Chromosome 22002
Chromosome 41986
Chromosome 222468
Chromosome 92324
Chromosome 212575
Chromosome 192761
Chromosome 101435
Chromosome 132397
Chromosome 61952
Chromosome 32508
Chromosome 172566
Chromosome 72213
Chromosome 181243
Chromosome 14217
Chromosome 82350

Publications

  1. "Integration of the genetic map and genome assembly of fugu facilitates insights into distinct features of genome evolution in teleosts and mammals."
    Kai W., Kikuchi K., Tohari S., Chew A.K., Tay A., Fujiwara A., Hosoya S., Suetake H., Naruse K., Brenner S., Suzuki Y., Venkatesh B.
    Genome Biol. Evol. 3:424-442(2011) [PubMed] [Europe PMC] [Abstract]
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