Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 19,931
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000005225
Taxonomy30611 - Otolemur garnettii
Last modifiedOctober 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000181295.3 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:92.5%[S:89.4%,D:3.1%],F:1.8%,M:5.8%,n:13780 primates_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

The northern greater galago(Otolemur garnettii), also known as Garnett's greater galago or small-eared greater galago, is a nocturnal, arboreal primate endemic to Africa. These are solitary animals that live and forage in their home range; both males and females dispersing from their birth territory. They are promiscuous in their sexual behaviour. The species exhibits a significant degree of sexual size dimorphism with males larger than the females. Their diet consists primarily of fruit and insects, approximately a 50/50 mix.

A high coverage assembly of the genome of Otolemur garnettii was sequenced by the Broad Institute using DNA from a single female individual.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence19931

Publications

  1. "Version 3 of the genome sequence of Otolemur garnettii (Bushbaby)."
    The Broad Institute Genome Sequencing Platform
    Di Palma F., Johnson J., Lander E.S., Lindblad-Toh K., Jaffe D.B., Gnerre S., MacCallum I., Przybylski D., Ribeiro F.J., Burton J.N., Walker B.J., Sharpe T., Hall G.
    Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again