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Overview

StatusReference proteome
Proteinsi25,333
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000005215
Taxonomy43179 - Ictidomys tridecemlineatus
Last modifiedOctober 22, 2018
Genome assembly and annotationi GCA_000236235.1 from Ensembl

Spermophilus tridecemlineatus (thirteen-lined ground squirrel) belongs to the order Rodentia. Grasslands in North America are its habitat.

The draft genome was submitted to INSDC in 2011. The size of the genome is about 2.5 Gb. Gene models were built by ENSEMBL using alignments with mammal and other vertebrate proteins. S. tridecemlineatus is one of 24 mammals that will be sequenced as part of the Mammalian Genome Project, funded by the National Institutes of Health (NIH). Species were chosen to maximize the branch length of the evolutionary tree while representing the diversity of mammalian species.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Unassembled WGS sequence25333

Publications

  1. "The Draft Genome of Spermophilus tridecemlineatus."
    Di Palma F., Alfoldi J., Johnson J., Berlin A., Gnerre S., Jaffe D., MacCallum I., Young S., Walker B.J., Lindblad-Toh K.
    Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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