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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 19,068
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000005203
Taxonomy7460 - Apis mellifera
StrainDH4
Last modifiedJanuary 29, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000002195.1 from EnsemblMetazoa full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:96.3%[S:95.7%,D:0.6%],F:2.7%,M:1%,n:5991 hymenoptera_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

The western honey bee (Apis mellifera) is essential to global ecology as a pollinator. It is native to Europe, western Asia, and Africa. Honey bee colonies having distinct social organization, with queens that produce offspring (by haplodiploidy, a sex determination system) and non-reproductive workers which gather and process food. One of the most evolved social behaviors that they show is their communication of new food discoveries with 'dance language', the only known non-primate symbolic language. This makes the honey bee a model organism for studying social behaviour. The genus Apis means "bee" in Latin, and mellifera comes from the Greek melli- "honey" and ferei "to bear".

The Apis mellifera complete genome sequence was published in 2006, by the Honey Bee Genome Sequencing Consortium. It contains 236 Mb, and approximately 10,600 protein-coding genes. The honey bee genome is characterized by a high A+T content, the absence of transposons, and a slow rate of evolution.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Linkage group 10
Linkage group 20
Linkage group 30
Linkage group 41
Linkage group 51
Linkage group 66
Linkage group 70
Linkage group 80
Linkage group 90
Linkage group 103
Linkage group 115
Linkage group 122
Linkage group 131
Linkage group 141
Linkage group 151
Linkage group 161
Mitochondrion0
Unplaced
19046
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Main funding by: National Institutes of Health

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