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Overview

StatusReference proteome
Proteinsi33,915
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000004994
Taxonomy4081 - Solanum lycopersicum
Straincv. Heinz 1706
Last modifiedMarch 20, 2019
Genome assembly and annotationi GCA_000188115.3 from EnsemblPlants

Solanum lycopersicum (tomato) is the second most important vegetable crop after the closely related potato (Solanum tuberosum) and is cultivated in over 140 different countries. The species originated in South America, where a number of wild relatives can be found. It is a perennial, though as a crop plant is often grown as an annual.

Solanum lycopersicum is particularly studied as a model organism for fruit development.

The tomato reference proteome is derived from the genome for the inbred cultivar Heinz 1706, which was sequenced by the Tomato Genome Consortium and published in 2012. The tomato genome has a haploid chromosome number of 12, containing 900 Mb and 35,000 protein-coding genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome 14217
Chromosome 23398
Chromosome 33333
Chromosome 42726
Chromosome 52505
Chromosome 62792
Chromosome 72473
Chromosome 82432
Chromosome 92472
Chromosome 102532
Chromosome 112302
Chromosome 122420
Unplaced
242
Chloroplast80

Publications

  1. "The tomato genome sequence provides insights into fleshy fruit evolution."
    Nature 2012:635-641(2012) [PubMed] [Europe PMC] [Abstract]
  2. "Sequence of the tomato chloroplast DNA and evolutionary comparison of solanaceous plastid genomes."
    Kahlau S., Aspinall S., Gray J.C., Bock R.
    J. Mol. Evol. 2006:194-207(2006) [PubMed] [Europe PMC] [Abstract]
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