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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 34,649
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000004994
Taxonomy4081 - Solanum lycopersicum
Straincv. Heinz 1706
Last modifiedJanuary 9, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000188115.3 from EnsemblPlants full
BuscoC:93.3%[S:91.7%,D:1.6%],F:3%,M:3.8%,n:1440
CompletenessStandard

Solanum lycopersicum (tomato) is the second most important vegetable crop after the closely related potato (Solanum tuberosum) and is cultivated in over 140 different countries. The species originated in South America, where a number of wild relatives can be found. It is a perennial, though as a crop plant is often grown as an annual.

Solanum lycopersicum is particularly studied as a model organism for fruit development.

The tomato reference proteome is derived from the genome for the inbred cultivar Heinz 1706, which was sequenced by the Tomato Genome Consortium and published in 2012. The tomato genome has a haploid chromosome number of 12, containing 900 Mb and 35,000 protein-coding genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 14217
Chromosome 23397
Chromosome 33333
Chromosome 42725
Chromosome 52506
Chromosome 62792
Chromosome 72472
Chromosome 82430
Chromosome 92472
Chromosome 102531
Chromosome 112302
Chromosome 122420
Unplaced
975
Chloroplast80

Publications

  1. "Sequence of the tomato chloroplast DNA and evolutionary comparison of solanaceous plastid genomes."
    Kahlau S., Aspinall S., Gray J.C., Bock R.
    J. Mol. Evol. 63:194-207(2006) [PubMed] [Europe PMC] [Abstract]
  2. "The tomato genome sequence provides insights into fleshy fruit evolution."
    Tomato Genome Consortium
    Nature 485:635-641(2012) [PubMed] [Europe PMC] [Abstract]
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