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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 3,187
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002745
Taxonomy582402 - Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418)
StrainATCC 49814 / DSM 5838 / IFAM 1418
Last modifiedSeptember 23, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000023785.1 from ENA/EMBL

Hirschia baltica is a yellow-pigmented, hyphal, budding bacteria. Strain IFAM 1418 (ATCC 49814) was isolated from the top 5cm of water in Kiel Fjord on the Baltic Sea, Germany in October 1982 and is the type strain for this species. It prefers brackish water and grows optimally between 22 and 29 degrees Celsius. Cells (without hyphae) are 0.5 to 1.0 by 0.5 to 6.0 um and are rod shaped, elliptical, or ovoid. The hyphae have a diameter of about 0.2 um. It can use a number of sugars, organic and amino acids as carbon sources including glucose, acetate, lactate, pyruvate, alanine, arginine, asparagine, aspartic acid, glutamic acid, glutamine, isoleucine, proline, and gluconate. It cannot grow on lactose, xylose, raffinose, ribose, ethanol, glycerol, mannitol, methanol, methylammonium chloride, formamide, citrate, fumarate, malate, glycine, histidine, lysine, or valine among others. Nitrogen sources are ammonia, glutamic acid, nitrate, and urea, and it can produce ammonia from peptone (adapted from PMID 2275859).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome3119
Plasmid pHbal0168

Publications

  1. "Genome sequences of eight morphologically diverse alphaproteobacteria."
    Brown P.J., Kysela D.T., Buechlein A., Hemmerich C., Brun Y.V.
    J. Bacteriol. 2011:4567-4568(2011) [PubMed] [Europe PMC] [Abstract]
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