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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 3,568
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002634
Taxonomy498217 - Edwardsiella tarda (strain EIB202)
StrainEIB202
Last modifiedJune 29, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000020865.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Edwardsiella ictaluri (strain 93-146) pan proteome (fasta)
BuscoC:95.5%[S:95.2%,D:0.2%],F:1.4%,M:3.2%,n:440

Edwardsiella tarda (strain EIB202) is a Gram-negative bacterium member of the normal gut microflora of fish, humans, chickens and other animals. This is the etiological agent for edwardsiellosis, a devastating fish disease prevailing in worldwide aquaculture industries and accounting for severe economical losses. This disease is often associated with poor water. E. tarda is pathogen of marine and freshwater fish isolated from channel catfish, Japanese eels, flounder, tilapia, and other economically important fish. It commonly affects more than 20 species of fishes including carp, tilapia, eel, catfish, mullet, salmon, trout, turbot and flounder, causing systemic hemorrhagic septicemia and emphysematous putrefactive disease with swelling skin lesions, as well as ulcer and necrosis in internal organs such as liver, kidney, spleen, and musculature. Besides piscine species, E. tarda also inhabits and infects a broad range of cold or warm -blooded hosts such as reptiles, amphibians, birds, mammals and even humans, raising a concern about E. tarda being a significant zoonotic pathogen. It causes opportunistic infections in humans, most commonly gastroenteritis and wound infections. However, this organism has been isolated from cases of septicemia and meningitis, primarily in immunocompromised patients. (Adaptated from PMID: 19865481).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome3515
Plasmid pEIB20253

Publications

  1. "Genome sequence of the versatile fish pathogen Edwardsiella tarda provides insights into its adaptation to broad host ranges and intracellular niches."
    Wang Q., Yang M., Xiao J., Wu H., Wang X., Lv Y., Xu L., Zheng H., Wang S., Zhao G., Liu Q., Zhang Y.
    PLoS ONE 4:E7646-E7646(2009) [PubMed] [Europe PMC] [Abstract]
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