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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 16,334
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002630
Taxonomy2880 - Ectocarpus siliculosus
StrainEc32 / CCAP1310/4
Last modifiedMarch 7, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000310025.1 from ENA/EMBL full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:97%[S:97%,D:0%],F:3%,M:0%,n:100 stramenopiles_odb10

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome LG01380
Chromosome LG021008
Chromosome LG03546
Chromosome LG04504
Chromosome LG05163
Chromosome LG06359
Chromosome LG07191
Chromosome LG08414
Chromosome LG09434
Chromosome LG10373
Chromosome LG11494
Chromosome LG12306
Chromosome LG13274
Chromosome LG14279
Chromosome LG15495
Chromosome LG16921
Chromosome LG17584
Chromosome LG18426
Chromosome LG19272
Chromosome LG20181
Chromosome LG21262
Chromosome LG22224
Chromosome LG23372
Chromosome LG24309
Chromosome LG25365
Chromosome LG26713
Chromosome LG27398
Chromosome LG28124
Chromosome LG2972
Chromosome LG30232
Chromosome LG3154
Chromosome LG3253
Chromosome LG33359
Chromosome LG3479
Unplaced LGUn3979
Chloroplast145
Unassembled WGS sequence0
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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