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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 4,112
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002606
Taxonomy349101 - Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)
StrainATCC 17029 / ATH 2.4.9
Last modifiedSeptember 30, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000015985.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) pan proteome (fasta)

Rhodobacter sphaeroides ATCC 17029 is purple nonsufur phototrophic bacterium able to grow under a wide variety of conditions. It is photosynthetic, which provides fundamental insights into light-driven, renewable-energy production and it can also detoxify metal oxides, which may be useful in bioremediation. Each of the three sequenced R.sphaeroides strains (2.4.1, ATCC 17025 and ATCC 17029) has a large ~3.0 Mb chromosome and a small ~0.9 - 1.2 Mb chromosome in addition to differing numbers of plasmids. Comparative optical mapping studies have shown that in terms of size and physical map structure, the large chromosome in these strains is relatively stable, whereas the smaller chromosomes are much more variable. Comparing these genomes will help determine what factors lead to chromosome and genome stability/instability, giving a better understanding of the mechanisms involved in genome evolution and speciation. Examining the genomes R.sphaeroides will also lead to a greater understanding of the structural and functional aspects of the light reactions of photosynthesis, mechanisms of CO2 fixation, nitrogen fixation, cytochrome diversity and electron transport systems. In addition, R. sphaeroides has been shown to be able to detoxify a number of metal oxides and oxyanions and is the subject of ongoing studies in this area. Additional investigations over many years have led to increased knowledge of tetrapyrrole and carotenoid biosynthesis, which have broad applicability (adapted from genome.jgi-psf.org/rhos9/rhos9.home.html).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome 12956
Chromosome 21049
Plasmid pRSPH01107

Publications

  1. "Complete sequence of plasmid pRSPH01 of Rhodobacter sphaeroides ATCC 17029."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J.
    Kaplan S.
    Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases
  2. "Complete sequence of chromosome 2 of Rhodobacter sphaeroides ATCC 17029."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J.
    Kaplan S.
    Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases
  3. "Complete sequence of chromosome 1 of Rhodobacter sphaeroides ATCC 17029."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J.
    Kaplan S.
    Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases
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