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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 4,890
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002566
Taxonomy402626 - Ralstonia pickettii (strain 12J)
Strain12J
Last modifiedJuly 3, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000020205.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Ralstonia pickettii (strain 12J) pan proteome (fasta)
BuscoC:100%[S:99.1%,D:0.9%],F:0%,M:0%,n:688
CompletenessStandard

Ralstonia spp. are aerobic Gram-negative, oxidase positive, non-fermentative rods that are found in water and soil. They have been recently separated from Burkholderia spp. Ralstonia pickettii is emerging as an opportunistic nocosomial pathogen in both the hospital setting and from environmental sources. R. pickettii has been isolated from a wide variety of clinical specimens including blood, urine and cerebrospinal fluid. It has been identified in biofilm formation in plastic water piping as well as in ultrapure water in industrial systems, in the space shuttle water system and in laboratory-based ultrapure water systems. It also has considerable biodegradative properties, being able to degrade a number of toxic compounds such as aromatic hydrocarbons, chlorinated phenolic compounds and so on.

Strain 12J was isolated in 1999 from sediments from Torch Lake, a heavily copper-contaminated lake located in Michigan, USA. It is resistant to high concentrations of copper, zinc and cadmium (modified from PubMed 12545313 and 16337309).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 13659
Chromosome 21141
Plasmid pRPIC0190

Publications

  1. "Complete sequence of chromosome 1 of Ralstonia pickettii 12J."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L.
    Richardson P.
    Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
  2. "Complete sequence of chromosome 2 of Ralstonia pickettii 12J."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L.
    Richardson P.
    Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
  3. "Complete sequence of plasmid 1 of Ralstonia pickettii 12J."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L.
    Richardson P.
    Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
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