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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 3,292
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002534
Taxonomy338963 - Pelobacter carbinolicus (strain DSM 2380 / NBRC 103641 / GraBd1)
StrainDSM 2380 / NBRC 103641 / GraBd1
Last modifiedSeptember 29, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000012885.1 from ENA/EMBL

Pelobacter carbinolicus is a Gram-negative Deltaproteobacterium. Pelobacter species are phylogenetically intertwined with Geobacter and Desulfuromonas species but the Pelobacter species lack several of the physiological characteristics of Geobacter and Desulfuromonas species. Functional analysis of the genome of P.carbinolicus is expected to provide important insights into the evolution of the Geobacteraceae, the predominant dissimilatory metal-reducing microorganisms in a diversity of sedimentary environments, as well as aid in elucidating the mechanisms for electron transfer to metals in Geobacteraceae and their syntrophic interactions.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome3292

Publications

  1. "Complete sequence of Pelobacter carbinolicus DSM 2380."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Chertkov O., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P.
    Submitted (OCT-2005) to the EMBL/GenBank/DDBJ databases
  2. "The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features."
    Aklujkar M., Haveman S.A., Didonato R.Jr., Chertkov O., Han C.S., Land M.L., Brown P., Lovley D.R.
    BMC Genomics 2012:690-690(2012) [PubMed] [Europe PMC] [Abstract]
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