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Overview

StatusReference proteome
Proteinsi29,955
Gene counti - Download one protein sequence per gene (FASTA)
Proteome IDiUP000002494
Taxonomy10116 - Rattus norvegicus
StrainBrown Norway
Last modifiedJuly 27, 2018
Genome assembly and annotationi GCA_000001895.4 from Ensembl

Rattus norvegicus (also called the brown rat, Hanover rat, Norwegian rat, Brown Norway rat) is a common rodent closely related to mouse. The species originated in Asia, not Norway as the name suggests, and has spread throughout the world.

The rat is a major pest and a reservoir of pathogens, being involved in the transmission of infectious diseases such as cholera, bubonic plague and typhus. On the other hand, Rattus norvegicus was the first mammalian species to be domesticated for scientific research.

The rat is an indispensable model organism in biomedical research, especially in cardiovascular and psychological research, and in therapeutic efficacy and toxicity studies. It is the third mammalian species to have its genome sequenced.

The reference proteome of Rattus norvegicus is derived from the genome sequence of strain Brown Norway (BN) that was published in 2004. The sequence data were mostly from two inbred female animals of strain BN/SsNHsd/Mcwi. The assembled genome size is 2.75 Gb.

Componentsi

Component nameGenome Accession(s)
Proteins
Unplaced
3117
Mitochondrion13
Chromosome 13558
Chromosome 21759
Chromosome 32117
Chromosome 41651
Chromosome 51600
Chromosome 61137
Chromosome 71632
Chromosome 81484
Chromosome 91073
Chromosome 102097
Chromosome 11716
Chromosome 12823
Chromosome 13838
Chromosome 14847
Chromosome 15859
Chromosome 16769
Chromosome 17759
Chromosome 18640
Chromosome 19668
Chromosome 20863
Chromosome X1023
Chromosome Y12

Publications

  1. Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases
  2. "The Mitochondrial Genome of Rattus Norvegicus strain Brown Norway."
    McLeod M.P., Muzny D.M., Metzker M.L., Abramzon S., Adams C., Alder J., Allen C., Allen H., Alsbrooks S., Amin A., Anguiano D., Anyalebechi V., Aoyagi A., Ayodeji M., Baca E., Baden H., Baldwin D., Bandaranaike D.
    Gibbs R.A.
    Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases
  3. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    Collins F.S.
    Nature 2004:493-521(2004) [PubMed] [Europe PMC] [Abstract]
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