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Overview

StatusReference proteome
Proteinsi4,821
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002493
Taxonomy223926 - Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
StrainRIMD 2210633
Last modifiedFebruary 27, 2018
Genome assembly and annotationi GCA_000196095.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) pan proteome (fasta)

Vibrio parahaemolyticus is a major causative agent of gastroenteritis, particularly in areas with high seafood consumption. This organism naturally inhabits marine and estuarine environments. It seems suited to various lifestyles: a planktonic, free-swimming state; a sessile existence attached to shellfish in a commensal relation, to the bottoms of boats, or to other surfaces in the ocean; or in host organisms. It has several cell types such as the swimmer cell and the swarmer cell, and it can exist in a viable but non-culturable state.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome 13078
Chromosome 21752

Publications

  1. "Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
    Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
    Lancet 2003:743-749(2003) [PubMed] [Europe PMC] [Abstract]
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