Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 5,122
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002485
Taxonomy284812 - Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Strain972 / ATCC 24843
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000002945.2 from EnsemblFungi full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (M) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment, and the name of the taxonomic lineage dataset used.</p> C:81.8%[S:79%,D:2.8%],F:1.4%,M:16.8%,n:1706 ascomycota_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Unknown

Schizosaccharomyces pombe, a fission yeast, belongs to the order Schizosaccharomycetales in the phylum Ascomycota. Since the 1950s it has served as a model organism for studying cell cycle regulation, cell division and DNA repair. The name pombe, which means beer in Swahili, goes back to the original isolation of S. pombe from millet beer.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome I2334
Chromosome II1863
Chromosome II, gap-filling sequence5
Chromosome III912
Mitochondrion11

Publications

  1. "The mitochondrial genome of Schizosaccharomyces pombe."
    Lang B.F.
    (In) null, pp.3118-3119 (1993)
  2. "The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans."
    Lang B.F.
    EMBO J. 3:2129-2136(1984) [PubMed] [Europe PMC] [Abstract]
  3. "The mitochondrial genome of the fission yeast, Schizosaccharomyces pombe. Sequence of the large-subunit ribosomal RNA gene, comparison of potential secondary structure in fungal mitochondrial large-subunit rRNAs and evolutionary considerations."
    Lang B.F., Cedergren R.J., Gray M.W.
    Eur. J. Biochem. 169:527-537(1987) [PubMed] [Europe PMC] [Abstract]
  4. "The mitochondrial genome of the fission yeast Schizosaccharomyces pombe. The cytochrome b gene has an intron closely related to the first two introns in the Saccharomyces cerevisiae cox1 gene."
    Lang B.F., Ahne F., Bonen L.
    J. Mol. Biol. 184:353-366(1985) [PubMed] [Europe PMC] [Abstract]
  5. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
  6. "Nucleotide sequence of the gene encoding the small ribosomal RNA in the mitochondrial genome of the fission yeast Schizosaccharomyces pombe."
    Trinkl H., Lang B.F., Wolf K.
    Nucl. Acids Res. 17:6730-6730(1989) [PubMed] [Europe PMC] [Abstract]
  7. "The gap-filling sequence on the left arm of chromosome 2 in fission yeast Schizosaccharomyces pombe."
    Sasaki M., Idiris A., Tada A., Kumagai H., Giga-Hama Y., Tohda H.
    Yeast 25:673-679(2008) [PubMed] [Europe PMC] [Abstract]
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again