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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 3,644
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002420
Taxonomy398767 - Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)
StrainATCC BAA-1151 / DSM 17278 / SZ
Last modifiedAugust 12, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000020385.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) pan proteome (fasta)

Geobacter lovleyi (strain SZ) is a rod-shaped, motile, Gram-negative, anaerobic delta-proteobacterium isolated from noncontaminated creek sediment. It belongs to a distinct, dechlorinating clade within the Geobacter group and is able to derive energy from acetate oxidation coupled to tetrachloroethene (PCE)-to-cis-1,2-dichloroethene (cis-DCE) dechlorination (i.e., chlororespiration). Strain SZ is the first Geobacter isolate capable of reductively dechlorinating the priority pollutant PCE, and shares features characteristic for members of the family Geobacteraceae. For example, strain SZ uses acetate and hydrogen as electron donors and metabolically reduces a variety of electron acceptors, including oxidized metals, radionuclides (e.g., hexavalent uranium) and nitrate. Remarkably, strain SZ reduces hexavalent uranium and PCE simultaneously, suggesting that SZ-type organisms have desirable characteristics for mixed waste site bioremediation. Specific 16S rRNA gene-targeted PCR detected strain SZ-like amplicons at several chlorinated solvent sites and the uranium-contaminated Integrated Field-Scale Subsurface Research Challenge (IFC) site in Oak Ridge, TN (FRC site). Further, a strain SZ-like bacterium was detected in the bioaugmentation consortium KB-1, suggesting that members of the dechlorinating Geobacter clade play relevant roles in bioremediation. Geobacter lovleyi was named to recognize the contributions of Derek R. Lovley to our understanding of microbial metal and radionuclide reduction.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome3566
Plasmid pGLOV0179
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Main funding by: National Institutes of Health

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