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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 2,087
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002382
Taxonomy521045 - Kosmotoga olearia (strain ATCC BAA-1733 / DSM 21960 / TBF 19.5.1)
StrainATCC BAA-1733 / DSM 21960 / TBF 19.5.1
Last modifiedNovember 5, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000023325.1 from ENA/EMBL full
BuscoC:92.6%[S:91.9%,D:0.7%],F:1.4%,M:6.1%,n:148
CompletenessStandard

Kosmotoga olearia (strain TBF 19.5.1) is a Gram-negative bacterium isolated from an oil deposit and has a broad temperature growth range, so it is useful for comparative structural biology of thermophilic and mesophilic proteins as well as learning about oil deposit ecosystems. It has the characteristic morphology of one or more cells contained in a sheath-like envelope which extends beyond the cell wall.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome2087

Publications

  1. "Genome Sequence of Kosmotoga olearia Strain TBF 19.5.1, a Thermophilic Bacterium with a Wide Growth Temperature Range, Isolated from the Troll B Oil Platform in the North Sea."
    Swithers K.S., Dipippo J.L., Bruce D.C., Detter C., Tapia R., Han S., Goodwin L.A., Han J., Woyke T., Pitluck S., Pennacchio L., Nolan M., Mikhailova N., Land M.L., Nesbo C.L., Gogarten J.P., Noll K.M.
    J. Bact. 193:5566-5567(2011) [PubMed] [Europe PMC] [Abstract]
  2. "Complete sequence of Thermotogales bacterium TBF 19.5.1."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Noll K.
    Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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