Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 1,872
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002366
Taxonomy572547 - Aminobacterium colombiense (strain DSM 12261 / ALA-1)
StrainDSM 12261 / ALA-1
Last modifiedJanuary 15, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000025885.1 from ENA/EMBL full
BuscoC:95.3%[S:95.3%,D:0%],F:1.4%,M:3.4%,n:148
CompletenessStandard

Aminobacterium colombiense (strain DSM 12261 / ALA-1) is a strictly anaerobic, amino acid-fermenting, Gram-negative bacterium isolated from an anaerobic lagoon of a dairy wastewater treatment plant. This organism can grow on serine, threonine, glycine and pyruvate. Alanine, glutamate, valine, isoleucine, leucine, methionine, aspartate and malate are oxidized only in the presence of the hydrogenotroph, M. formicicum (H2 scavenger). In addition, the utilization of cysteine, threonine and alpha-ketoglutarate are also improved in the presence of M. formicicum. An 80% hydrogen atmosphere inhibits growth on threonine and alpha-ketoglutarate, whereas glycine degradation is not affected. Serine and pyruvate are partially affected by the presence of hydrogen. The fermentation of serine to acetate occurs via the conversion of serine to pyruvate and ammonia with a serine dehydratase. The optimal growth temperature is 37 degrees Celsius and the temperature range for growth is between 20 and 42 degrees Celsius, with no growth occurring at 18 and 45 degrees Celsius. It does not require NaCl for growth but tolerates less than 1.5% NaCl. Optimum growth occurs in the presence of 0.05 to 0.5%NaCl. The pH range for growth is 6.6 to 8.5 with an optimum pH around 7.3. (Adapted from PMID: 16887649).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome1872
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again